Compaction

Background

Compaction is a table service employed by Hudi specifically in Merge On Read(MOR) tables to merge updates from row-based log files to the corresponding columnar-based base file periodically to produce a new version of the base file. Compaction is not applicable to Copy On Write(COW) tables and only applies to MOR tables.

Why MOR tables need compaction?

To understand the significance of compaction in MOR tables, it is helpful to understand the MOR table layout first. In Hudi, data is organized in terms of file groups. Each file group in a MOR table consists of a base file and one or more log files. Typically, during writes, inserts are stored in the base file, and updates are appended to log files.

Figure: MOR table file layout showing different file groups with base data file and log files

During the compaction process, updates from the log files are merged with the base file to form a new version of the base file as shown below. Since MOR is designed to be write-optimized, on new writes, after index tagging is complete, Hudi appends the records pertaining to each file groups as log blocks in log files. There is no synchronous merge happening during write, resulting in a lower write amplification and better write latency. In contrast, on new writes to a COW table, Hudi combines the new writes with the older base file to produce a new version of the base file resulting in a higher write amplification and higher write latencies.

Figure: Compaction on a given file group

While serving the read query(snapshot read), for each file group, records in base file and all its corresponding log files are merged together and served. And hence the read latency for MOR snapshot query might be higher compared to COW table since there is no merge involved in case of COW at read time. Compaction takes care of merging the updates from log files with the base file at regular intervals to bound the growth of log files and to ensure the read latencies do not spike up.

Compaction Architecture

There are two steps to compaction.

• Compaction Scheduling: In this step, Hudi scans the partitions and selects file slices to be compacted. A compaction plan is finally written to Hudi timeline.
• Compaction Execution: In this step the compaction plan is read and file slices are compacted.

Strategies in Compaction Scheduling

There are two strategies involved in scheduling the compaction:

• Trigger Strategy: Determines how often to trigger scheduling of the compaction.
• Compaction Strategy: Determines which file groups to compact.

Hudi provides various options for both these strategies as discussed below.

Trigger Strategies

Compaction Strategies

Available Strategies (Provide the full package name when using the strategy):

• LogFileNumBasedCompactionStrategy: orders the compactions based on the total log files count, filters the file group with log files count greater than the threshold and limits the compactions within a configured IO bound.
• LogFileSizeBasedCompactionStrategy: orders the compactions based on the total log files size, filters the file group which log files size is greater than the threshold and limits the compactions within a configured IO bound.
• BoundedIOCompactionStrategy: CompactionStrategy which looks at total IO to be done for the compaction (read + write) and limits the list of compactions to be under a configured limit on the IO.
• BoundedPartitionAwareCompactionStrategy:This strategy ensures that the last N partitions are picked up even if there are later partitions created for the table. lastNPartitions is defined as the N partitions before the currentDate. currentDay = 2018/01/01 The table has partitions for 2018/02/02 and 2018/03/03 beyond the currentDay This strategy will pick up the following partitions for compaction : (2018/01/01, allPartitionsInRange[(2018/01/01 - lastNPartitions) to 2018/01/01), 2018/02/02, 2018/03/03)
• DayBasedCompactionStrategy:This strategy orders compactions in reverse order of creation of Hive Partitions. It helps to compact data in latest partitions first and then older capped at the Total_IO allowed.
• UnBoundedCompactionStrategy: UnBoundedCompactionStrategy will not change ordering or filter any compaction. It is a pass-through and will compact all the base files which has a log file. This usually means no-intelligence on compaction.
• UnBoundedPartitionAwareCompactionStrategy:UnBoundedPartitionAwareCompactionStrategy is a custom UnBounded Strategy. This will filter all the partitions that are eligible to be compacted by a {@link BoundedPartitionAwareCompactionStrategy} and return the result. This is done so that a long running UnBoundedPartitionAwareCompactionStrategy does not step over partitions in a shorter running BoundedPartitionAwareCompactionStrategy. Essentially, this is an inverse of the partitions chosen in BoundedPartitionAwareCompactionStrategy

note

Please refer to advanced configs for more details.

Ways to trigger Compaction

Inline

By default, compaction is run asynchronously.

If latency of ingesting records is important for you, you are most likely using Merge-On-Read tables. Merge-On-Read tables store data using a combination of columnar (e.g parquet) + row based (e.g avro) file formats. Updates are logged to delta files & later compacted to produce new versions of columnar files. To improve ingestion latency, Async Compaction is the default configuration.

If immediate read performance of a new commit is important for you, or you want simplicity of not managing separate compaction jobs, you may want synchronous inline compaction, which means that as a commit is written it is also compacted by the same job.

For this deployment mode, please use hoodie.compact.inline = true for Spark Datasource and Spark SQL writers. For HoodieStreamer sync once mode inline compaction can be achieved by passing the flag --disable-compaction (Meaning to disable async compaction). Further in HoodieStreamer when both ingestion and compaction is running in the same spark context, you can use resource allocation configuration in Hudi Streamer CLI such as (--delta-sync-scheduling-weight, --compact-scheduling-weight, --delta-sync-scheduling-minshare, and --compact-scheduling-minshare) to control executor allocation between ingestion and compaction.

Async & Offline Compaction models

There are a couple of ways here to trigger compaction .

Async execution within the same process

In streaming ingestion write models like HoodieStreamer continuous mode, Flink and Spark Streaming, async compaction is enabled by default and runs alongside without blocking regular ingestion.

Spark Structured Streaming

Compactions are scheduled and executed asynchronously inside the streaming job.Here is an example snippet in java

import org.apache.hudi.DataSourceWriteOptions;
import org.apache.hudi.HoodieDataSourceHelpers;
import org.apache.hudi.config.HoodieCompactionConfig;
import org.apache.hudi.config.HoodieWriteConfig;
import org.apache.spark.sql.streaming.OutputMode;
import org.apache.spark.sql.streaming.ProcessingTime;
 DataStreamWriter<Row> writer = streamingInput.writeStream().format("org.apache.hudi")
        .option("hoodie.datasource.write.operation", operationType)
        .option("hoodie.datasource.write.table.type", tableType)
        .option("hoodie.datasource.write.recordkey.field", "_row_key")
        .option("hoodie.datasource.write.partitionpath.field", "partition")
        .option("hoodie.datasource.write.precombine.field"(), "timestamp")
        .option("hoodie.compact.inline.max.delta.commits", "10")
        .option("hoodie.datasource.compaction.async.enable", "true")
        .option("hoodie.table.name", tableName).option("checkpointLocation", checkpointLocation)
        .outputMode(OutputMode.Append());
 writer.trigger(new ProcessingTime(30000)).start(tablePath);

Hudi Streamer Continuous Mode

Hudi Streamer provides continuous ingestion mode where a single long running spark application
ingests data to Hudi table continuously from upstream sources. In this mode, Hudi supports managing asynchronous compactions. Here is an example snippet for running in continuous mode with async compactions

spark-submit --packages org.apache.hudi:hudi-utilities-slim-bundle_2.12:1.0.0,org.apache.hudi:hudi-spark3.5-bundle_2.12:1.0.0 \
--class org.apache.hudi.utilities.streamer.HoodieStreamer \
--table-type MERGE_ON_READ \
--target-base-path <hudi_base_path> \
--target-table <hudi_table> \
--source-class org.apache.hudi.utilities.sources.JsonDFSSource \
--source-ordering-field ts \
--props /path/to/source.properties \
--continous

Scheduling and Execution by a separate process

For some use cases with long running table services, instead of having the regular writes block, users have the option to run both steps of the compaction (scheduling and execution) offline in a separate process altogether. This allows for regular writers to not bother about these compaction steps and allows users to provide more resources for the compaction job as needed.

note

This model needs a lock provider configured for all jobs - the regular writer as well as the offline compaction job.

Scheduling inline and executing async

In this model, it is possible for a Spark Datasource writer or a Flink job to just schedule the compaction inline ( that will serialize the compaction plan in the timeline but will not execute it). And then a separate utility like HudiCompactor or HoodieFlinkCompactor can take care of periodically executing the compaction plan.

note

This model may need a lock provider if metadata table is enabled.

Hudi Compactor Utility

Hudi provides a standalone tool to execute specific compactions asynchronously. Below is an example and you can read more in the deployment guide The compactor utility allows to do scheduling and execution of compaction.

Example:

spark-submit --packages org.apache.hudi:hudi-utilities-slim-bundle_2.12:1.0.0,org.apache.hudi:hudi-spark3.5-bundle_2.12:1.0.0 \
--class org.apache.hudi.utilities.HoodieCompactor \
--base-path <base_path> \
--table-name <table_name> \
--schema-file <schema_file> \
--instant-time <compaction_instant>

Note, the instant-time parameter is now optional for the Hudi Compactor Utility. If using the utility without --instant time, the spark-submit will execute the earliest scheduled compaction on the Hudi timeline.

Hudi CLI

Hudi CLI is yet another way to execute specific compactions asynchronously. Here is an example and you can read more in the deployment guide

Example:

hudi:trips->compaction run --tableName <table_name> --parallelism <parallelism> --compactionInstant <InstantTime>
...

Flink Offline Compaction

Offline compaction needs to submit the Flink task on the command line. The program entry is as follows: hudi-flink-bundle_2.11-0.9.0-SNAPSHOT.jar : org.apache.hudi.sink.compact.HoodieFlinkCompactor

# Command line
./bin/flink run -c org.apache.hudi.sink.compact.HoodieFlinkCompactor lib/hudi-flink-bundle_2.11-0.9.0.jar --path hdfs://xxx:9000/table

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