- Extension Types
- Introduction
- Static Attributes
- Dynamic Attributes
- Type declarations
- Extension types and None
- Special methods
- Properties
- Subclassing
- C methods
- Forward-declaring extension types
- Fast instantiation
- Instantiation from existing C/C++ pointers
- Making extension types weak-referenceable
- Controlling deallocation and garbage collection in CPython
- Controlling pickling
- Public and external extension types
- Public extension types
Extension Types
Introduction
As well as creating normal user-defined classes with the Python classstatement, Cython also lets you create new built-in Python types, known asextension types. You define an extension type using the cdef
classstatement. Here’s an example:
- from __future__ import print_function
- cdef class Shrubbery:
- cdef int width, height
- def __init__(self, w, h):
- self.width = w
- self.height = h
- def describe(self):
- print("This shrubbery is", self.width,
- "by", self.height, "cubits.")
As you can see, a Cython extension type definition looks a lot like a Pythonclass definition. Within it, you use the def statement to define methods thatcan be called from Python code. You can even define many of the specialmethods such as init()
as you would in Python.
The main difference is that you can use the cdef
statement to defineattributes. The attributes may be Python objects (either generic or of aparticular extension type), or they may be of any C data type. So you can useextension types to wrap arbitrary C data structures and provide a Python-likeinterface to them.
Static Attributes
Attributes of an extension type are stored directly in the object’s C struct.The set of attributes is fixed at compile time; you can’t add attributes to anextension type instance at run time simply by assigning to them, as you couldwith a Python class instance. However, you can explicitly enable supportfor dynamically assigned attributes, or subclass the extension type with a normalPython class, which then supports arbitrary attribute assignments.See Dynamic Attributes.
There are two ways that attributes of an extension type can be accessed: byPython attribute lookup, or by direct access to the C struct from Cython code.Python code is only able to access attributes of an extension type by thefirst method, but Cython code can use either method.
By default, extension type attributes are only accessible by direct access,not Python access, which means that they are not accessible from Python code.To make them accessible from Python code, you need to declare them aspublic
or readonly
. For example:
- cdef class Shrubbery:
- cdef public int width, height
- cdef readonly float depth
makes the width and height attributes readable and writable from Python code,and the depth attribute readable but not writable.
Note
You can only expose simple C types, such as ints, floats, andstrings, for Python access. You can also expose Python-valued attributes.
Note
Also the public
and readonly
options apply only toPython access, not direct access. All the attributes of an extension typeare always readable and writable by C-level access.
Dynamic Attributes
It is not possible to add attributes to an extension type at runtime by default.You have two ways of avoiding this limitation, both add an overhead whena method is called from Python code. Especially when calling cpdef
methods.
The first approach is to create a Python subclass.:
- cdef class Animal:
- cdef int number_of_legs
- def __cinit__(self, int number_of_legs):
- self.number_of_legs = number_of_legs
- class ExtendableAnimal(Animal): # Note that we use class, not cdef class
- pass
- dog = ExtendableAnimal(4)
- dog.has_tail = True
Declaring a dict
attribute is the second way of enabling dynamic attributes.:
- cdef class Animal:
- cdef int number_of_legs
- cdef dict __dict__
- def __cinit__(self, int number_of_legs):
- self.number_of_legs = number_of_legs
- dog = Animal(4)
- dog.has_tail = True
Type declarations
Before you can directly access the attributes of an extension type, the Cythoncompiler must know that you have an instance of that type, and not just ageneric Python object. It knows this already in the case of the self
parameter of the methods of that type, but in other cases you will have to usea type declaration.
For example, in the following function:
- cdef widen_shrubbery(sh, extra_width): # BAD
- sh.width = sh.width + extra_width
because the sh
parameter hasn’t been given a type, the width attributewill be accessed by a Python attribute lookup. If the attribute has beendeclared public
or readonly
then this will work, but itwill be very inefficient. If the attribute is private, it will not work at all– the code will compile, but an attribute error will be raised at run time.
The solution is to declare sh
as being of type Shrubbery
, asfollows:
- from my_module cimport Shrubbery
- cdef widen_shrubbery(Shrubbery sh, extra_width):
- sh.width = sh.width + extra_width
Now the Cython compiler knows that sh
has a C attribute calledwidth
and will generate code to access it directly and efficiently.The same consideration applies to local variables, for example:
- from my_module cimport Shrubbery
- cdef Shrubbery another_shrubbery(Shrubbery sh1):
- cdef Shrubbery sh2
- sh2 = Shrubbery()
- sh2.width = sh1.width
- sh2.height = sh1.height
- return sh2
Note
We here cimport
the class Shrubbery
, and this is necessaryto declare the type at compile time. To be able to cimport
an extension type,we split the class definition into two parts, one in a definition file andthe other in the corresponding implementation file. You should readSharing Extension Types to learn to do that.
Type Testing and Casting
Suppose I have a method quest()
which returns an object of type Shrubbery
.To access it’s width I could write:
- cdef Shrubbery sh = quest()
- print(sh.width)
which requires the use of a local variable and performs a type test on assignment.If you know the return value of quest()
will be of type Shrubbery
you can use a cast to write:
- print( (<Shrubbery>quest()).width )
This may be dangerous if quest()
is not actually a Shrubbery
, as itwill try to access width as a C struct member which may not exist. At the C level,rather than raising an AttributeError
, either an nonsensical result will bereturned (interpreting whatever data is at that address as an int) or a segfaultmay result from trying to access invalid memory. Instead, one can write:
- print( (<Shrubbery?>quest()).width )
which performs a type check (possibly raising a TypeError
) before making thecast and allowing the code to proceed.
To explicitly test the type of an object, use the isinstance()
builtin function.For known builtin or extension types, Cython translates these into afast and safe type check that ignores changes tothe object’s class
attribute etc., so that after a successfulisinstance()
test, code can rely on the expected C structure of theextension type and its cdef
attributes and methods.
Extension types and None
When you declare a parameter or C variable as being of an extension type,Cython will allow it to take on the value None
as well as values of itsdeclared type. This is analogous to the way a C pointer can take on the valueNULL
, and you need to exercise the same caution because of it. There is noproblem as long as you are performing Python operations on it, because fulldynamic type checking will be applied. However, when you access C attributesof an extension type (as in the widen_shrubbery function above), it’s up toyou to make sure the reference you’re using is not None
– in theinterests of efficiency, Cython does not check this.
You need to be particularly careful when exposing Python functions which takeextension types as arguments. If we wanted to make widen_shrubbery()
aPython function, for example, if we simply wrote:
- def widen_shrubbery(Shrubbery sh, extra_width): # This is
- sh.width = sh.width + extra_width # dangerous!
then users of our module could crash it by passing None
for the sh
parameter.
One way to fix this would be:
- def widen_shrubbery(Shrubbery sh, extra_width):
- if sh is None:
- raise TypeError
- sh.width = sh.width + extra_width
but since this is anticipated to be such a frequent requirement, Cythonprovides a more convenient way. Parameters of a Python function declared as anextension type can have a not None
clause:
- def widen_shrubbery(Shrubbery sh not None, extra_width):
- sh.width = sh.width + extra_width
Now the function will automatically check that sh
is not None
alongwith checking that it has the right type.
Note
not None
clause can only be used in Python functions (defined withdef
) and not C functions (defined with cdef
). Ifyou need to check whether a parameter to a C function is None, you willneed to do it yourself.
Note
Some more things:
- The self parameter of a method of an extension type is guaranteed never tobe
None
. - When comparing a value with
None
, keep in mind that, ifx
is a Pythonobject,x is None
andx is not None
are very efficient because theytranslate directly to C pointer comparisons, whereasx == None
andx != None
, or simply usingx
as a boolean value (as inif x: …
)will invoke Python operations and therefore be much slower.
Special methods
Although the principles are similar, there are substantial differences betweenmany of the xxx()
special methods of extension types and their Pythoncounterparts. There is a separate page devoted to this subject, and you shouldread it carefully before attempting to use any special methods in yourextension types.
Properties
You can declare properties in an extension class using the same syntax as in ordinary Python code:
- cdef class Spam:
- @property
- def cheese(self):
- # This is called when the property is read.
- ...
- @cheese.setter
- def cheese(self, value):
- # This is called when the property is written.
- ...
- @cheese.deleter
- def cheese(self):
- # This is called when the property is deleted.
There is also a special (deprecated) legacy syntax for defining properties in an extension class:
- cdef class Spam:
- property cheese:
- "A doc string can go here."
- def __get__(self):
- # This is called when the property is read.
- ...
- def __set__(self, value):
- # This is called when the property is written.
- ...
- def __del__(self):
- # This is called when the property is deleted.
The get()
, set()
and del()
methods are alloptional; if they are omitted, an exception will be raised when thecorresponding operation is attempted.
Here’s a complete example. It defines a property which adds to a list eachtime it is written to, returns the list when it is read, and empties the listwhen it is deleted.:
- # cheesy.pyx
- cdef class CheeseShop:
- cdef object cheeses
- def __cinit__(self):
- self.cheeses = []
- @property
- def cheese(self):
- return "We don't have: %s" % self.cheeses
- @cheese.setter
- def cheese(self, value):
- self.cheeses.append(value)
- @cheese.deleter
- def cheese(self):
- del self.cheeses[:]
- # Test input
- from cheesy import CheeseShop
- shop = CheeseShop()
- print(shop.cheese)
- shop.cheese = "camembert"
- print(shop.cheese)
- shop.cheese = "cheddar"
- print(shop.cheese)
- del shop.cheese
- print(shop.cheese)
- # Test output
- We don't have: []
- We don't have: ['camembert']
- We don't have: ['camembert', 'cheddar']
- We don't have: []
Subclassing
If an extension type inherits from other types, the first base class must bea built-in type or another extension type:
- cdef class Parrot:
- ...
- cdef class Norwegian(Parrot):
- ...
A complete definition of the base type must be available to Cython, so if thebase type is a built-in type, it must have been previously declared as anextern extension type. If the base type is defined in another Cython module, itmust either be declared as an extern extension type or imported using thecimport
statement.
Multiple inheritance is supported, however the second and subsequent baseclasses must be an ordinary Python class (not an extension type or a built-intype).
Cython extension types can also be subclassed in Python. A Python class caninherit from multiple extension types provided that the usual Python rules formultiple inheritance are followed (i.e. the C layouts of all the base classesmust be compatible).
There is a way to prevent extension types frombeing subtyped in Python. This is done via the final
directive,usually set on an extension type using a decorator:
- cimport cython
- @cython.final
- cdef class Parrot:
- def done(self): pass
Trying to create a Python subclass from this type will raise aTypeError
at runtime. Cython will also prevent subtyping afinal type inside of the same module, i.e. creating an extension typethat uses a final type as its base type will fail at compile time.Note, however, that this restriction does not currently propagate toother extension modules, so even final extension types can still besubtyped at the C level by foreign code.
C methods
Extension types can have C methods as well as Python methods. Like Cfunctions, C methods are declared using cdef
or cpdef
instead ofdef
. C methods are “virtual”, and may be overridden in derivedextension types. In addition, cpdef
methods can even be overridden by pythonmethods when called as C method. This adds a little to their calling overheadcompared to a cdef
method:
- # pets.pyx
- cdef class Parrot:
- cdef void describe(self):
- print("This parrot is resting.")
- cdef class Norwegian(Parrot):
- cdef void describe(self):
- Parrot.describe(self)
- print("Lovely plumage!")
- cdef Parrot p1, p2
- p1 = Parrot()
- p2 = Norwegian()
- print("p1:")
- p1.describe()
- print("p2:")
- p2.describe()
- # Output
- p1:
- This parrot is resting.
- p2:
- This parrot is resting.
- Lovely plumage!
The above example also illustrates that a C method can call an inherited Cmethod using the usual Python technique, i.e.:
- Parrot.describe(self)
cdef methods can be declared static by using the @staticmethod decorator.This can be especially useful for constructing classes that take non-Pythoncompatible types.:
- cdef class OwnedPointer:
- cdef void* ptr
- def __dealloc__(self):
- if self.ptr is not NULL:
- free(self.ptr)
- @staticmethod
- cdef create(void* ptr):
- p = OwnedPointer()
- p.ptr = ptr
- return p
Forward-declaring extension types
Extension types can be forward-declared, like struct
andunion
types. This is usually not necessary and violates theDRY principle (Don’t Repeat Yourself).
If you are forward-declaring an extension type that has a base class, you mustspecify the base class in both the forward declaration and its subsequentdefinition, for example,:
- cdef class A(B)
- ...
- cdef class A(B):
- # attributes and methods
Fast instantiation
Cython provides two ways to speed up the instantiation of extension types.The first one is a direct call to the new()
special static method,as known from Python. For an extension type Penguin
, you could usethe following code:
- cdef class Penguin:
- cdef object food
- def __cinit__(self, food):
- self.food = food
- def __init__(self, food):
- print("eating!")
- normal_penguin = Penguin('fish')
- fast_penguin = Penguin.__new__(Penguin, 'wheat') # note: not calling __init__() !
Note that the path through new()
will not call the type’sinit()
method (again, as known from Python). Thus, in the exampleabove, the first instantiation will print eating!
, but the second willnot. This is only one of the reasons why the cinit()
method issafer and preferable over the normal init()
method for extensiontypes.
The second performance improvement applies to types that are often createdand deleted in a row, so that they can benefit from a freelist. Cythonprovides the decorator @cython.freelist(N)
for this, which creates astatically sized freelist of N
instances for a given type. Example:
- cimport cython
- @cython.freelist(8)
- cdef class Penguin:
- cdef object food
- def __cinit__(self, food):
- self.food = food
- penguin = Penguin('fish 1')
- penguin = None
- penguin = Penguin('fish 2') # does not need to allocate memory!
Instantiation from existing C/C++ pointers
It is quite common to want to instantiate an extension class from an existing(pointer to a) data structure, often as returned by external C/C++ functions.
As extension classes can only accept Python objects as arguments in theirconstructors, this necessitates the use of factory functions. For example,
- from libc.stdlib cimport malloc, free
- # Example C struct
- ctypedef struct my_c_struct:
- int a
- int b
- cdef class WrapperClass:
- """A wrapper class for a C/C++ data structure"""
- cdef my_c_struct *_ptr
- cdef bint ptr_owner
- def __cinit__(self):
- self.ptr_owner = False
- def __dealloc__(self):
- # De-allocate if not null and flag is set
- if self._ptr is not NULL and self.ptr_owner is True:
- free(self._ptr)
- self._ptr = NULL
- # Extension class properties
- @property
- def a(self):
- return self._ptr.a if self._ptr is not NULL else None
- @property
- def b(self):
- return self._ptr.b if self._ptr is not NULL else None
- @staticmethod
- cdef WrapperClass from_ptr(my_c_struct *_ptr, bint owner=False):
- """Factory function to create WrapperClass objects from
- given my_c_struct pointer.
- Setting ``owner`` flag to ``True`` causes
- the extension type to ``free`` the structure pointed to by ``_ptr``
- when the wrapper object is deallocated."""
- # Call to __new__ bypasses __init__ constructor
- cdef WrapperClass wrapper = WrapperClass.__new__(WrapperClass)
- wrapper._ptr = _ptr
- wrapper.ptr_owner = owner
- return wrapper
- @staticmethod
- cdef WrapperClass new_struct():
- """Factory function to create WrapperClass objects with
- newly allocated my_c_struct"""
- cdef my_c_struct *_ptr = <my_c_struct *>malloc(sizeof(my_c_struct))
- if _ptr is NULL:
- raise MemoryError
- _ptr.a = 0
- _ptr.b = 0
- return WrapperClass.from_ptr(_ptr, owner=True)
To then create a WrapperClass
object from an existing my_c_struct
pointer, WrapperClass.from_ptr(ptr)
can be used in Cython code. To allocatea new structure and wrap it at the same time, WrapperClass.new_struct
can beused instead.
It is possible to create multiple Python objects all from the same pointerwhich point to the same in-memory data, if that is wanted, though care must betaken when de-allocating as can be seen above.Additionally, the ptr_owner
flag can be used to control whichWrapperClass
object owns the pointer and is responsible for de-allocation -this is set to False
by default in the example and can be enabled by callingfrom_ptr(ptr, owner=True)
.
The GIL must not be released in dealloc
either, or another lock usedif it is, in such cases or race conditions can occur with multiplede-allocations.
Being a part of the object constructor, the cinit
method has a Pythonsignature, which makes it unable to accept a my_c_struct
pointer as anargument.
Attempts to use pointers in a Python signature will result in errors like:
- Cannot convert 'my_c_struct *' to Python object
This is because Cython cannot automatically convert a pointer to a Pythonobject, unlike with native types like int
.
Note that for native types, Cython will copy the value and create a new Pythonobject while in the above case, data is not copied and deallocating memory isa responsibility of the extension class.
Making extension types weak-referenceable
By default, extension types do not support having weak references made tothem. You can enable weak referencing by declaring a C attribute of typeobject called weakref
. For example,:
- cdef class ExplodingAnimal:
- """This animal will self-destruct when it is
- no longer strongly referenced."""
- cdef object __weakref__
Controlling deallocation and garbage collection in CPython
Note
This section only applies to the usual CPython implementationof Python. Other implementations like PyPy work differently.
Introduction
First of all, it is good to understand that there are two ways totrigger deallocation of Python objects in CPython:CPython uses reference counting for all objects and any object with areference count of zero is immediately deallocated. This is the mostcommon way of deallocating an object. For example, consider
- >>> x = "foo"
- >>> x = "bar"
After executing the second line, the string "foo"
is no longer referenced,so it is deallocated. This is done using the tpdealloc
slot, which can becustomized in Cython by implementing _dealloc
.
The second mechanism is the cyclic garbage collector.This is meant to resolve cyclic reference cycles such as
- >>> class Object:
- ... pass
- >>> def make_cycle():
- ... x = Object()
- ... y = [x]
- ... x.attr = y
When calling makecycle
, a reference cycle is created since x
references y
and vice versa. Even though neither x
or y
are accessible after make_cycle
returns, both have a reference countof 1, so they are not immediately deallocated. At regular times, the garbagecollector runs, which will notice the reference cycle(using the tp_traverse
slot) and break it.Breaking a reference cycle means taking an object in the cycleand removing all references from it to other Python objects (we call this_clearing an object). Clearing is almost the same as deallocating, exceptthat the actual object is not yet freed. For x
in the example above,the attributes of x
would be removed from x
.
Note that it suffices to clear just one object in the reference cycle,since there is no longer a cycle after clearing one object. Once the cycleis broken, the usual refcount-based deallocation will actually remove theobjects from memory. Clearing is implemented in the tp_clear
slot.As we just explained, it is sufficient that one object in the cycleimplements tp_clear
.
Enabling the deallocation trashcan
In CPython, it is possible to create deeply recursive objects. For example:
- >>> L = None
- >>> for i in range(2**20):
- ... L = [L]
Now imagine that we delete the final L
. Then L
deallocatesL[0]
, which deallocates L[0][0]
and so on until we reach arecursion depth of 2**20
. This deallocation is done in C and sucha deep recursion will likely overflow the C call stack, crashing Python.
CPython invented a mechanism for this called the trashcan. It limits therecursion depth of deallocations by delaying some deallocations.
By default, Cython extension types do not use the trashcan but it can beenabled by setting the trashcan
directive to True
. For example:
- cimport cython
- @cython.trashcan(True)
- cdef class Object:
- cdef dict __dict__
Trashcan usage is inherited by subclasses(unless explicitly disabled by @cython.trashcan(False)
).Some builtin types like list
use the trashcan, so subclasses of ituse the trashcan by default.
Disabling cycle breaking (tp_clear)
By default, each extension type will support the cyclic garbage collector ofCPython. If any Python objects can be referenced, Cython will automaticallygenerate the tp_traverse
and tp_clear
slots. This is usually what youwant.
There is at least one reason why this might not be what you want: If you needto cleanup some external resources in the dealloc
special function andyour object happened to be in a reference cycle, the garbage collector mayhave triggered a call to tp_clear
to clear the object(see Introduction).
In that case, any object references have vanished when dealloc
is called. Now your cleanup code lost access to the objects it has to clean up.To fix this, you can disable clearing instances of a specific class by usingthe no_gc_clear
directive:
- @cython.no_gc_clear
cdef class DBCursor:
cdef DBConnection conn
cdef DBAPI_Cursor *raw_cursor# ...
def __dealloc__(self):
DBAPI_close_cursor(self.conn.raw_conn, self.raw_cursor)
This example tries to close a cursor via a database connection when the Pythonobject is destroyed. The DBConnection
object is kept alive by the referencefrom DBCursor
. But if a cursor happens to be in a reference cycle, thegarbage collector may delete the database connection reference,which makes it impossible to clean up the cursor.
If you use nogc_clear
, it is important that any given reference cyclecontains at least one object _without no_gc_clear
. Otherwise, the cyclecannot be broken, which is a memory leak.
Disabling cyclic garbage collection
In rare cases, extension types can be guaranteed not to participate in cycles,but the compiler won’t be able to prove this. This would be the case ifthe class can never reference itself, even indirectly.In that case, you can manually disable cycle collection by using theno_gc
directive, but beware that doing so when in fact the extension typecan participate in cycles could cause memory leaks
- @cython.no_gc
cdef class UserInfo:
cdef str name
cdef tuple addresses
If you can be sure addresses will contain only references to strings,the above would be safe, and it may yield a significant speedup, depending onyour usage pattern.
Controlling pickling
By default, Cython will generate a reduce()
method to allow picklingan extension type if and only if each of its members are convertible to Pythonand it has no cinit
method.To require this behavior (i.e. throw an error at compile time if a classcannot be pickled) decorate the class with @cython.autopickle(True)
.One can also annotate with @cython.autopickle(False)
to get the oldbehavior of not generating a __reduce
method in any case.
Manually implementing a reduce
or _reduce_ex`_ method will alsodisable this auto-generation and can be used to support pickling of morecomplicated types.
Public and external extension types
Extension types can be declared extern or public. An extern extension typedeclaration makes an extension type defined in external C code available to aCython module. A public extension type declaration makes an extension typedefined in a Cython module available to external C code.
External extension types
An extern extension type allows you to gain access to the internals of Pythonobjects defined in the Python core or in a non-Cython extension module.
Note
In previous versions of Pyrex, extern extension types were also used toreference extension types defined in another Pyrex module. While you can stilldo that, Cython provides a better mechanism for this. SeeSharing Declarations Between Cython Modules.
Here is an example which will let you get at the C-level members of thebuilt-in complex object.:
- from __future__ import print_function
- cdef extern from "complexobject.h":
- struct Py_complex:
- double real
- double imag
- ctypedef class __builtin__.complex [object PyComplexObject]:
- cdef Py_complex cval
- # A function which uses the above type
- def spam(complex c):
- print("Real:", c.cval.real)
- print("Imag:", c.cval.imag)
Note
Some important things:
- In this example,
ctypedef
class has been used. This isbecause, in the Python header files, thePyComplexObject
struct isdeclared with:
- typedef struct {
- ...
- } PyComplexObject;
At runtime, a check will be performed when importing the Cythonc-extension module that builtin.complex
’s tp_basicsize
matches sizeof(`PyComplexObject)
. This check can fail if the Cythonc-extension module was compiled with one version of thecomplexobject.h
header but imported into a Python with a changedheader. This check can be tweaked by using check_size
in the namespecification clause.
As well as the name of the extension type, the module in which its typeobject can be found is also specified. See the implicit importing sectionbelow.
When declaring an external extension type, you don’t declare anymethods. Declaration of methods is not required in order to call them,because the calls are Python method calls. Also, as with
struct
andunion
, if your extension classdeclaration is inside acdef
extern from block, you only need todeclare those C members which you wish to access.
Name specification clause
The part of the class declaration in square brackets is a special feature onlyavailable for extern or public extension types. The full form of this clauseis:
- [object object_struct_name, type type_object_name, check_size cs_option]
Where:
object_struct_name
is the name to assume for the type’s C struct.type_object_name
is the name to assume for the type’s staticallydeclared type object.cs_option
iswarn
(the default),error
, orignore
and is onlyused for external extension types. Iferror
, thesizeof(object_struct)
that was found at compile time must match the type’s runtimetp_basicsize
exactly, otherwise the module import will fail with an error. Ifwarn
orignore
, theobject_struct
is allowed to be smaller than the type’stp_basicsize
, which indicates the runtime type may be part of an updatedmodule, and that the external module’s developers extended the object in abackward-compatible fashion (only adding new fields to the end of the object).Ifwarn
, a warning will be emitted in this case.
The clauses can be written in any order.
If the extension type declaration is inside a cdef
extern fromblock, the object clause is required, because Cython must be able to generatecode that is compatible with the declarations in the header file. Otherwise,for extern extension types, the object clause is optional.
For public extension types, the object and type clauses are both required,because Cython must be able to generate code that is compatible with external Ccode.
Attribute name matching and aliasing
Sometimes the type’s C struct as specified in objectstructname
may usedifferent labels for the fields than those in the PyTypeObject
. This caneasily happen in hand-coded C extensions where the PyTypeObject_Foo
has agetter method, but the name does not match the name in the PyFooObject
. InNumPy, for instance, python-level dtype.itemsize
is a getter for the Cstruct field elsize
. Cython supports aliasing field names so that one canwrite dtype.itemsize
in Cython code which will be compiled into directaccess of the C struct field, without going through a C-API equivalent ofdtype.__getattr
('itemsize')
.
For example we may have an extensionmodule foo_extension
:
- cdef class Foo:
- cdef public int field0, field1, field2;
- def __init__(self, f0, f1, f2):
- self.field0 = f0
- self.field1 = f1
- self.field2 = f2
but a C struct in a file foo_nominal.h
:
- typedef struct {
- PyObject_HEAD
- int f0;
- int f1;
- int f2;
- } FooStructNominal;
Note that the struct uses f0
, f1
, f2
but they are field0
,field1
, and field2
in Foo
. We are given this situation, includinga header file with that struct, and we wish to write a function to sum thevalues. If we write an extension module wrapper
:
- cdef extern from "foo_nominal.h":
- ctypedef class foo_extension.Foo [object FooStructNominal]:
- cdef:
- int field0
- int field1
- int feild2
- def sum(Foo f):
- return f.field0 + f.field1 + f.field2
then wrapper.sum(f)
(where f = foo_extension.Foo(1, 2, 3)
) will stilluse the C-API equivalent of:
- return f.__getattr__('field0') +
- f.__getattr__('field1') +
- f.__getattr__('field1')
instead of the desired C equivalent of return f->f0 + f->f1 + f->f2
. We canalias the fields by using:
- cdef extern from "foo_nominal.h":
- ctypedef class foo_extension.Foo [object FooStructNominal]:
- cdef:
- int field0 "f0"
- int field1 "f1"
- int field2 "f2"
- def sum(Foo f) except -1:
- return f.field0 + f.field1 + f.field2
and now Cython will replace the slow getattr
with direct C access tothe FooStructNominal fields. This is useful when directly processing Pythoncode. No changes to Python need be made to achieve significant speedups, eventhough the field names in Python and C are different. Of course, one shouldmake sure the fields are equivalent.
Implicit importing
Cython requires you to include a module name in an extern extension classdeclaration, for example,:
- cdef extern class MyModule.Spam:
- ...
The type object will be implicitly imported from the specified module andbound to the corresponding name in this module. In other words, in thisexample an implicit:
- from MyModule import Spam
statement will be executed at module load time.
The module name can be a dotted name to refer to a module inside a packagehierarchy, for example,:
- cdef extern class My.Nested.Package.Spam:
- ...
You can also specify an alternative name under which to import the type usingan as clause, for example,:
- cdef extern class My.Nested.Package.Spam as Yummy:
- ...
which corresponds to the implicit import statement:
- from My.Nested.Package import Spam as Yummy
Type names vs. constructor names
Inside a Cython module, the name of an extension type serves two distinctpurposes. When used in an expression, it refers to a module-level globalvariable holding the type’s constructor (i.e. its type-object). However, itcan also be used as a C type name to declare variables, arguments and returnvalues of that type.
When you declare:
- cdef extern class MyModule.Spam:
- ...
the name Spam serves both these roles. There may be other names by which youcan refer to the constructor, but only Spam can be used as a type name. Forexample, if you were to explicitly import MyModule, you could useMyModule.Spam()
to create a Spam instance, but you wouldn’t be able to useMyModule.Spam
as a type name.
When an as clause is used, the name specified in the as clause also takes overboth roles. So if you declare:
- cdef extern class MyModule.Spam as Yummy:
- ...
then Yummy becomes both the type name and a name for the constructor. Again,there are other ways that you could get hold of the constructor, but onlyYummy is usable as a type name.
Public extension types
An extension type can be declared public, in which case a .h
file isgenerated containing declarations for its object struct and type object. Byincluding the .h
file in external C code that you write, that code canaccess the attributes of the extension type.